OSU-BMBL/scread-protocol

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Language
R
Created about 4 years ago
Updated over 2 years ago

OSU-BMBL/scread-protocol

OSU-BMBL

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deepmaps

Single-cell biological network inference using a heterogeneous graph transformer

scDEAL

Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data

Jupyter Notebook

IRIS

A Shiny web server for interactive visualization and analysis of RNA-seq data

ssread

A single-cell and spatial RNA-seq database for Alzheimer’s Disease

marsgt

Multi-omics data analysis for rare population inference using single-cell graph transformer

Jupyter Notebook

scGNN2.0

Jupyter Notebook

IRIS3

IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)

BMBL-analysis-notebooks

A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.

DESSO

A DL-based framework for sequence and shape motif identification in the human genome

CeRIS

Cell-type-specific Regulon Inference from Single-cell RNA-Seq

metaqubic

A biclustering-based package for metagenomic and metatranscriptomic data

scread-backend

deepmotif-benchmark

IDAM

Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data

bmbl-class-notebooks

BMI8050-2020

MEGA

a deep learning-based python package for identifying cancer-associated intratumoral microbes.

PGRP-Grape-Grafting

Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots

NOTCH1-cardiac-lineage-scRNAseq

Impaired Human Cardiac Cell Development due to NOTCH1 Deficiency

GOST

IOM

UberOperon

AD-spatial-code

Code for manuscript "Spatially resolved transcriptomics reveals gene signatures underlying the vulnerability of 2 human middle temporal gyrus in Alzheimer's disease"