Discover OSU-BMBL/AD-spatial-code Open Source project

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OSU-BMBL

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Code for manuscript "Spatially resolved transcriptomics reveals gene signatures underlying the vulnerability of 2 human middle temporal gyrus in Alzheimer's disease"

deepmaps

Single-cell biological network inference using a heterogeneous graph transformer

HTML

scDEAL

Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data

Jupyter Notebook

IRIS

A Shiny web server for interactive visualization and analysis of RNA-seq data

ssread

A single-cell and spatial RNA-seq database for Alzheimer’s Disease

Vue

marsgt

Multi-omics data analysis for rare population inference using single-cell graph transformer

Jupyter Notebook

scread-protocol

scGNN2.0

Jupyter Notebook

IRIS3

IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)

JavaScript

BMBL-analysis-notebooks

A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.

HTML

DESSO

A DL-based framework for sequence and shape motif identification in the human genome

MATLAB

CeRIS

Cell-type-specific Regulon Inference from Single-cell RNA-Seq

metaqubic

A biclustering-based package for metagenomic and metatranscriptomic data

C++

scread-backend

JavaScript

deepmotif-benchmark

IDAM

Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data

bmbl-class-notebooks

HTML

BMI8050-2020

HTML

MEGA

a deep learning-based python package for identifying cancer-associated intratumoral microbes.

Python

PGRP-Grape-Grafting

Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots

Python

NOTCH1-cardiac-lineage-scRNAseq

Impaired Human Cardiac Cell Development due to NOTCH1 Deficiency

HTML

GOST

IOM

Python

UberOperon

C++

OSU-BMBL/AD-spatial-code

OSU-BMBL

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