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awesome open list of pointers about open science for software and computational science

Awesome open science for software and computational science

awesome-open-science-software lists resources about open science and software:

  • software as main experimental tool (aka computational methods)
  • software as main study object (software engineering, programming language, systems software, ...).
  • software support for open science (communication, data sharing, etc)

RSS feed: https://github.com/INRIA/awesome-open-science-software/commits/master.atom

Community

  • Eclipse Science: open source and collaboration for computational science.
  • Mozilla Science is a community of researchers, developers, and librarians making research open and accessible.
  • Research Data Alliance (RDA) is a community-driven organization supported by the European Commission, the United States Government's National Science Foundation and National Institute of Standards and Technology, and the Australian Government’s Department of Innovation with the goal of building the social and technical infrastructure to enable open sharing of data.
  • The Software Sustainability Institute's mission is to cultivate better, more sustainable, research software to enable world-class research.
  • Openscience.org supports the development of open scientific software, in particular for cheminformatics.
  • NumFOCUS Open-code, better science. Non-profit organization that promotes sustainable high-level programming languages, open code development, and reproducible scientific research.

Software as Experimental Tool

Reference documents (edit to add one):

Events (edit to add one):

Artifact review and evaluations (edit to add one):

Papers (edit to add one):

Tools (edit to add one):

  • Depsy helps build the software-intensive science of the future by promoting credit for software as a fundamental building block of science.
  • CodeMeta The CodeMeta project proposes a way to have structured metadata for research software.
  • code-ini Code meta data via .ini files

Software as Research Object

Software data curation and preservation (edit to add one):

Others:

Software Support for Open Science

(edit to add one)

  • IEEE DataPort is an open repository of datasets hosted by IEEE
  • Dataverse A data repository framework to share and publish research data
  • Code as a Research Object is a prototype integration between Github and figshare.
  • dokieli is a client-side editor for decentralised article publishing, annotations and social interactions for science. Its source code is open source under the Apache License, Version 2.0. Maintained by Sarven Capadisli (Github) et al.
  • Open Science Framework (OSF.io) provides project management support for researchers across the entire research lifecycle. Developed by the Center for Open Science.
  • Anonymous Github is a system to anonymize open-science Github repositories before referring to them in a double-blind paper submission.
  • recipy records provenance for Python programs
  • shournal records provenance on the shell. It provides the exact command which created a given file
  • codeocean Code Ocean is a cloud-based computational reproducibility platform to run scientific code
  • LabPal is a Java library that allows you to design, control, process and package experiments that are run on a computer, and to streamline the integration of results within a research paper.

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