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bowtie2
A fast and sensitive gapped read alignerads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencingads1-slides
Slides for Algorithms for DNA Sequencing Coursera classcomp-genomics-class
Code and examples for JHU Computational Genomics classbowtie
An ultrafast memory-efficient short read alignerc-cpp-notes
Lecture notes and example code for teaching C & C++langmead-lab
Publicly-visible Langmead Lab resourcesaws-indexes
Catalog of genomic indexes freely available from public cloudscrossbow
Variant calling from sequence reads using cloud computingqtip
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualitiesseq-frontiers-class
Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis classmyrna
Cloud-scale differential expression for RNA-seqbowtie-majref
Scripts related to building major-allele references for Bowtie and Bowtie 2bowtie-scaling
Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"bsmooth-align
Alignment of bisulfite sequence reads and tabulation of read-level methylation measurementsads1-hw-examples
How some homework solutions should work on some small examplessra-example
percy
Scripts for starting permanent, lightweight EC2 instancespublic-seq-data
Scripts, manifests, etc for grabbing and lightly analyzing public datarecount-docker
Dockerization of recount and its R/Bioconductor dependenciesbowtie-dev
jupyter-all
Jupyter environment with various language kernels already installedlangmead-lab-web
Langmead lab websitecgsi18
Scripts for downloading and querying raw Snaptron datadocker-oss
Automatic compatibility tests, e.g. to learn which OS versions a binary can be run onLove Open Source and this site? Check out how you can help us