Mouse Imaging Centre, Hospital for Sick Children, Toronto Canada (@Mouse-Imaging-Centre)
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Mouse-Imaging-Centre

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  • Stars
    star
    93
  • Global Org. Rank 59,908 (Top 20 %)
  • Registered about 10 years ago
  • Most used languages
    Python
         40.0 %
    R
         13.3 %
    HTML
         13.3 %
    C++
         13.3 %
    Nix
         6.7 %
    C
         6.7 %
    Cython     6.7 %
  • Location πŸ‡¨πŸ‡¦ Canada
  • Country Total Rank 5,950
  • Country Ranking
    Cython     5
    Nix
         99
    R
         144
    Python
         1,646
    C++
         2,226
    HTML
         3,219
    C
         4,509

Top repositories

1

pydpiper

Python code for flexible pipeline control
Python
25
star
2

RMINC

Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, Jim Nikelski and Matthijs van Eede. Some additional information can be found here:
R
22
star
3

pyminc

A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch
Python
14
star
4

minclaplace

Laplace's equation for measuring thickness (or other uses of streamlines) between two boundaries
Cython
8
star
5

minc-stuffs

Scripts and bits of code for minc files.
Python
6
star
6

brain-view2

C++
4
star
7

MRIcrotome

R package for MRI data visualization
R
3
star
8

generate_deformation_fields

Given an input Jacobian determinant, this code will generate a deformation field that produces that Jacobian field. (Made for MINC format files)
Python
2
star
9

Scinet-SS-bayesian-neuroimaging-R

Slides for the Scinet Summer School session on bayesian analysis of neuroimaging data with R and Stan
HTML
2
star
10

py_minc

py_minc is a python module for working with MINC data format files, and was developed by John G. Sled.
C
1
star
11

cerebrovascular_analysis

Python
1
star
12

summer_school2017

Mouse Imaging Summer School 2017
HTML
1
star
13

tagtoxfm_bspline

tagtoxfm_bspline is a program to read a set of tag points and create an approximate grid transform using tensor cubic B splines. The output transformation is of .xfm format used by MINC files (https://github.com/BIC-MNI/minc) Created: April 7, 2006, John G. Sled using code from tagtoxfm by Peter Neelin
C++
1
star
14

fastCell

Fast Deep Neural Networks for Cell Image Analysis
Python
1
star
15

Image-Registration-Quarantine-Makefile

Provides a Makefile based on Vlad Fonov's Makefile from the EZminc package, and includes additional packages that allow you to build a full quarantine capable of image registration (geared by default to MRI mouse brain registration)
1
star
16

mice-nix-overlay

Nix expressions for installing some MINC-related medical image processing software
Nix
1
star