Computational Systems Biology (@CSBiology)
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CSBiology

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  • Stars
    star
    426
  • Global Org. Rank 25,853 (Top 9 %)
  • Registered over 8 years ago
  • Most used languages
    F#
         78.4 %
    Jupyter Notebook
         8.1 %
    C#
         5.4 %
    SCSS     2.7 %
    TeX
         2.7 %
    HTML
         2.7 %
  • Location πŸ‡©πŸ‡ͺ Germany
  • Country Total Rank 3,487
  • Country Ranking
    F#
         3
    SCSS     373
    TeX
         1,105
    Jupyter Notebook
         1,358
    C#
         1,441
    HTML
         1,479

Top repositories

1

BioFSharp

Open source bioinformatics and computational biology toolbox written in F#.
F#
105
star
2

FSharp.FGL

Functional graph library for F#
F#
59
star
3

FSharpML

Library for the FSharp friendly usage of the ML.NET project. For documentation visit:
F#
37
star
4

FSharpGephiStreamer

F# functions for streaming any kind of graph/network data to the network visualization tool gephi
F#
25
star
5

FSharpAux

Auxiliary functions and data structures for the F# programming language
F#
23
star
6

BioFSharp.Mz

BioFSharp.Mz - modular computational proteomics
F#
13
star
7

MzLite

Reader and writer for different mzData formats used in protein mass spectrometry
C#
12
star
8

ProteomIQon

F#
12
star
9

deepStabP

A small web ui and python api service to predict protein melting point temperatures.
F#
11
star
10

DynamicObj

F# library supporting Dynamic Objects including inheritance in functional style
F#
11
star
11

CSBlog

The blog about all things CSB
HTML
10
star
12

CsbScaffold

Basic scaffold for biological data analysis using FSharp
F#
9
star
13

TMEA

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
F#
8
star
14

MzIO

Generic data model to unify various readers and writers for different formats used in protein mass spectrometry
F#
8
star
15

FsMzLite

F#
7
star
16

DeedleExtensions

F#
6
star
17

LitXml

Small FSharp based DSL for writing literal xml
F#
6
star
18

FS3

Access S3 storages from F# via AWS SDK
F#
6
star
19

BIO-BTE-06-L-7

Notebooks, scripts and guides for the computational section of VM 1/ VM 2: Practical class - Molecular Biotechnology II (BIO-BTE-06-L-7)
Jupyter Notebook
5
star
20

FsDocker

F# Client for Docker Remote API based on Docker.DotNet Project
F#
5
star
21

DataFrame

data frame library for .NET based on ML.NET IDataView
F#
4
star
22

BioFSharp.Parallel

GPU parallelized functions for BioFSharp
F#
4
star
23

BioFSharp.ImgP

Image recognition and analysis using wavelet transformations
F#
4
star
24

BioFSharp.BioDB

Access to Biological Databases from F#
F#
4
star
25

iMLP

codebase and dotnet CLI tool for prediction of iMTS-Ls
F#
3
star
26

OBO.NET

An OBO file format parser, written in F#.
F#
3
star
27

BioFSharp.Recipes

Recipes for various workflows in computational biology using BioFSharp and its various subprojects
Jupyter Notebook
3
star
28

BioFSharp.Vis

Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms
F#
3
star
29

Slurmi

F#
3
star
30

csbiology.github.io

Website for teaching, publications and news from CSB (Computational Systems Biology)
TeX
2
star
31

Drafo

F#
2
star
32

BIO-MBP-06-U-2

Notebooks for the practical course
Jupyter Notebook
2
star
33

iMLP_Web

codebase of our webservice for prediction of iMTS-Ls
SCSS
2
star
34

conda-dotnetcore-sdk

1
star
35

TempClass

Package for fitting and classification of short and noisy time series using constrained smoothing splines.
F#
1
star
36

LibraryTemplate

Dotnet new template for creating library projects with the set of tooling we use
F#
1
star
37

FunctionalAnnotatorWeb

Web site for manual curation of functional annotation of different model plant systems
C#
1
star
38

FSharpSpreadsheetML

FSharp wrapper for Open XML SDK, allowing Excel File reading and manipulation
F#
1
star
39

BIO-BTE-10-L-4

Project suggestions for the project work for Wissenschaftliche Programmierung fΓΌr Biolog*innen (BIO-BTE-10-L-4)
1
star