Explore @CSBiology Open Source projects

Computational Systems Biology (@CSBiology)

CSBiology

Stars
435
Global Org. Rank 25,988 (Top 9 %)
Registered almost 9 years ago
Most used languages

F#
78.9 %

Jupyter Notebook
7.9 %

C#
5.3 %

SCSS 2.6 %

CSS
2.6 %

HTML
2.6 %
Location 🇩🇪 Germany
Country Total Rank 3,487
Country Ranking

F#
3

SCSS 299

Jupyter Notebook
1,480

C#
1,481

HTML
1,521

CSS
1,922

BioFSharp

Open source bioinformatics and computational biology toolbox written in F#.

FSharp.FGL

Functional graph library for F#

FSharpML

Library for the FSharp friendly usage of the ML.NET project. For documentation visit:

FSharpGephiStreamer

F# functions for streaming any kind of graph/network data to the network visualization tool gephi

FSharpAux

Auxiliary functions and data structures for the F# programming language

DynamicObj

F# library supporting Dynamic Objects including inheritance in functional style

BioFSharp.Mz

BioFSharp.Mz - modular computational proteomics

MzLite

Reader and writer for different mzData formats used in protein mass spectrometry

ProteomIQon

deepStabP

A small web ui and python api service to predict protein melting point temperatures.

CSBlog

The blog about all things CSB

CsbScaffold

Basic scaffold for biological data analysis using FSharp

TMEA

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.

MzIO

Generic data model to unify various readers and writers for different formats used in protein mass spectrometry

FsMzLite

DeedleExtensions

LitXml

Small FSharp based DSL for writing literal xml

FS3

Access S3 storages from F# via AWS SDK

FsDocker

F# Client for Docker Remote API based on Docker.DotNet Project

YAMLicious

DataFrame

data frame library for .NET based on ML.NET IDataView

BioFSharp.Parallel

GPU parallelized functions for BioFSharp

BioFSharp.ImgP

Image recognition and analysis using wavelet transformations

BIO-BTE-06-L-7

Notebooks, scripts and guides for the computational section of VM 1/ VM 2: Practical class - Molecular Biotechnology II (BIO-BTE-06-L-7)

Jupyter Notebook

BioFSharp.BioDB

Access to Biological Databases from F#

iMLP

codebase and dotnet CLI tool for prediction of iMTS-Ls

OBO.NET

An OBO file format parser, written in F#.

BioFSharp.Vis

Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms

BioFSharp.Recipes

Recipes for various workflows in computational biology using BioFSharp and its various subprojects

Jupyter Notebook

Slurmi

csbiology.github.io

Website for teaching, publications and news from CSB (Computational Systems Biology)

Drafo

BIO-MBP-06-U-2

Notebooks for the practical course

Jupyter Notebook

iMLP_Web

codebase of our webservice for prediction of iMTS-Ls

conda-dotnetcore-sdk

LibraryTemplate

Dotnet new template for creating library projects with the set of tooling we use

FunctionalAnnotatorWeb

Web site for manual curation of functional annotation of different model plant systems

FSharpSpreadsheetML

FSharp wrapper for Open XML SDK, allowing Excel File reading and manipulation

TempClass

Package for fitting and classification of short and noisy time series using constrained smoothing splines.

BIO-BTE-10-L-4

Project suggestions for the project work for Wissenschaftliche Programmierung für Biolog*innen (BIO-BTE-10-L-4)