Siavash Mirarab (@smirarab)
github

smirarab

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  • Stars
    star
    438
  • Global Rank 63,572 (Top 3 %)
  • Followers 148
  • Following 7
  • Registered about 13 years ago
  • Most used languages
    Java
         50.0 %
    Shell
         25.0 %
    Python
         16.7 %
    Perl
         8.3 %

Top repositories

1

ASTRAL

Accurate Species TRee ALgorithm
Java
229
star
2

pasta

PASTA (Practical Alignment using SATe and Transitivity)
Python
84
star
3

sepp

Ensemble of HMM methods (SEPP, TIPP, UPP)
Python
80
star
4

1kp

Data and scripts used in the oneKP capstone analyses
Shell
12
star
5

FastSP

Software for comparing two (very large) alignments efficiently
Java
7
star
6

binning

Code for statistical binning and related scripts
Perl
6
star
7

sepp-refs

5
star
8

DynaDup

Software to Estimate Species Tree by minimizing Duplication and Loss
Java
4
star
9

tutorials

3
star
10

mrpmatrix

builds a MRP (Matrix Representation with Parsimony) matrix on huge input files quickly
Java
3
star
11

mirarablab

2
star
12

skimming_scripts

scripts for preprocessing/analysis of genome skim data
Java
1
star
13

avian-indels

Code and data from the indel data
Shell
1
star
14

multi-locus-bootstrapping

Creates sets of bootstrap replicates for multi-locus bootstrapping
Shell
1
star
15

global

Java
1
star