Wouter De Coster (@wdecoster)
github

wdecoster

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Top repositories

1

NanoPlot

Plotting scripts for long read sequencing data
Python
388
star
2

nanopack

An overview of all nanopack tools
Python
195
star
3

nanofilt

Filtering and trimming of long read sequencing data
Python
173
star
4

chopper

Rust
120
star
5

cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
Rust
113
star
6

methplotlib

Plotting tools for nanopore methylation data
Python
84
star
7

nanoQC

Quality control tools for nanopore sequencing data
Python
83
star
8

nanocomp

Comparison of multiple long read datasets
Python
80
star
9

nanostat

Create statistic summary of an Oxford Nanopore read dataset
Python
78
star
10

nano-snakemake

A snakemake pipeline for SV analysis from nanopore genome sequencing
Python
50
star
11

nanolyse

Remove lambda phage reads from a fastq file
Python
27
star
12

surpyvor

A python wrapper around SURVIVOR
Python
18
star
13

kyber

Rust
17
star
14

DEA.R

Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
R
16
star
15

phasius

Rust
11
star
16

nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments
Python
11
star
17

nanomath

A few simple math function for other Oxford Nanopore processing scripts
Python
9
star
18

PromisingPreprint

A python twitter bot tweeting about preprints reaching an interesting altmetric score
Python
8
star
19

enrichr_cli

Python script to use enrichr from command line (http://amp.pharm.mssm.edu/Enrichr/)
Python
7
star
20

nanotest

Small test datasets for testing nanopack scripts and modules
Shell
4
star
21

make_arrow

A Rust tool to create an arrow file from a cram/bam file
Rust
4
star
22

read_length_SV_discovery

Jupyter Notebook
3
star
23

fast5purge

Purge a fast5 file from sensitive information
Python
2
star
24

nanoplotter

Plotting functions of Oxford Nanopore sequencing data
Python
2
star
25

STRdust

Tandem repeat genotyping from long reads
Rust
2
star
26

tool-packaging

Some notes on how to make a pypi package
Python
1
star
27

GermlineCNVCaller

Testing the GATK4.beta.5 GermlineCNVCaller
Python
1
star
28

nanosplit

Splitting Oxford Nanopore data in a fail and pass dataset using a user defined quality cutoff
Python
1
star
29

determine-gender

Scripts to determine the gender of samples in exome and transcriptome sequencing
Python
1
star
30

combine_images

Bit of Python code to resize and combine images
Python
1
star