Tom Battaglia (@twbattaglia)
github

twbattaglia

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  • Stars
    star
    508
  • Global Rank 56,975 (Top 2 %)
  • Followers 102
  • Following 25
  • Registered almost 11 years ago
  • Most used languages
    R
         50.0 %
    Python
         21.4 %
    HTML
         7.1 %
    JavaScript
         7.1 %
    Shell
         7.1 %
    Nextflow     7.1 %
  • Location ๐Ÿ‡ณ๐Ÿ‡ฑ Netherlands
  • Country Total Rank 16,730
  • Country Ranking
    Nextflow     3
    R
         7
    Python
         1,395
    HTML
         2,037
    Shell
         2,642
    JavaScript
         6,034

Top repositories

1

RNAseq-workflow

A repository for setting up a RNAseq workflow
R
406
star
2

MicrobeDS

A repository for large-scale microbiome datasets, formatted for phyloseq
R
31
star
3

koeken

A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
Python
26
star
4

btools

A set of R functions that help faciliate a lot of tedious processing
R
18
star
5

tumor-microbiome

A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)
R
9
star
6

geo-submitter

A webapp for preparing expression data for GEO
R
4
star
7

amplicon-nf

Nextflow
4
star
8

conda-menu

An (unofficial) menubar app for creating and launching conda virtual environments.
Python
2
star
9

q2-summarizer

QIIME2 plugin for generating interactive summary data
JavaScript
2
star
10

HANSolo-manuscript

Identification of patient-specific T cell neoantigens through HLA-agnostic genetic screens (Cattaneo et al, Nature Biotechnology, 2023)
HTML
2
star
11

btools-shiny

A shiny interactive dashboard for 16s microbial data analysis
R
1
star
12

snpcheck

Package for internal SNP-based sample swap detection
R
1
star
13

cookiecutter-rnaseq

A cookiecutter implementation of the RNAseq workflow described in https://github.com/twbattaglia/RNAseq-workflow
Shell
1
star
14

tumor-microbiome-nf

Python
1
star