Discover @tjburns08 Open Source projects

Tyler Burns (@tjburns08)

tjburns08

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knn_sleepwalk

A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.

cluster_stability

Some helper functions to visualize the stability of a clustering method for your single-cell data.

Sconify

Group CyTOF data into overlapping k-nearest neighborhoods for enhanced single-cell visualizations.

twitter-mining-scilit

Mining automated paper-posting bots from twitter, especially useful to determine which pre-prints are being talked about.

tjburns08.github.io

KnnSleepwalk

R package that allows for visualization of the KNN of an embedding compared to the KNN of the original high-dimensional data.

dimr_spectrum_single_cell

View a spectrum of dimensionality reduction embeddings for your single-cell data ranging from t-SNE like to UMAP like

Jupyter Notebook

umap-for-cytof

My early solution to running UMAP on your flow and mass cytometry data and compare it with t-SNE. Now I use the umap package in CRAN.