Discover @timoast Open Source projects

Tim Stuart (@timoast)

timoast

Stars
170
Global Rank 139,912 (Top 5 %)
Followers 135
Registered over 11 years ago
Most used languages

Python
35.7 %

R
28.6 %

HTML
14.3 %

Shell
7.1 %

Jupyter Notebook
7.1 %

CSS
7.1 %
Location 🇸🇬 Singapore
Country Total Rank 890
Country Ranking

R
27

CSS
80

Python
278

HTML
442

Shell
442

Jupyter Notebook
455

sinto

Tools for single-cell data processing

notebook-template

Template for a computational lab notebook using bookdown

SNARE-seq

Code to process raw SNARE-seq ATAC reads

signac-paper

Code to reproduce analyses shown in the Signac paper

ngs-tools

Miscellaneous tools for genomics

UCLA-T32

UCLA T32 Single-Cell Analysis Workshop

Jupyter Notebook

Arabidopsis-TE-variants

Analysis of TE presence/absence data

biorxivData

A look at some bioRxiv metrics

methylQC

Quality control for methylome data

sctools

Single cell RNA-seq tools

TE-cistrome

Analysis of transcription factor bindng sites within transposable elements

TEpy

Uses paired-end sequencing data to find transposable element variants

timoast.github.io

frag-spec

Fragment file format specification

epi-immune

Processing pipeline for public multiome and scATAC-seq immune datasets