Discover @tamuri Open Source projects

Asif Tamuri (@tamuri)

tamuri

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Global Rank 448,285 (Top 16 %)
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Registered over 14 years ago
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Java
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Location 🇬🇧 United Kingdom
Country Total Rank 17,258
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Java
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treesub

A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated phylogenetic tree showing which substitutions occurred on a given branch. Originally written for colleagues at the MRC NIMR.

swmutsel

Implementation of the site-wise mutation-selection model (swMutSel) described in Tamuri et al. (2012, 2014) , and Tamuri and dos Reis (2022)

pal

Mirror of Drummond, A., & Strimmer, K. (2001). PAL: an object-oriented programming library for molecular evolution and phylogenetics.

tdg09

Software and data used in Tamuri AU, dos Reis M, Hay AJ, Goldstein RA (2009) Identifying Changes in Selective Constraints: Host Shifts in Influenza. PLoS Comput Biol 5(11): e1000564 doi:10.1371/journal.pcbi.1000564

tdg12

This program is no longer being updated. Please use the implementation at https://github.com/tamuri/swmutsel

dng

Archschema: graphs of related Pfam domain architectures ("domain network graphs")