Stephen Turner (@stephenturner)
github

stephenturner

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  • Stars
    star
    2,435
  • Global Rank 12,420 (Top 0.5 %)
  • Followers 788
  • Following 5
  • Registered about 14 years ago
  • Most used languages
    R
         50.0 %
    HTML
         16.7 %
    CSS
         10.0 %
    Dockerfile
         10.0 %
    Shell
         10.0 %
    C
         3.3 %
  • Location 🇺🇸 United States
  • Country Total Rank 4,394
  • Country Ranking
    R
         150
    Dockerfile
         913
    HTML
         1,214
    Shell
         4,262
    CSS
         4,856

Top repositories

1

oneliners

Useful bash one-liners for bioinformatics.
1,835
star
2

annotables

R data package for annotating/converting Gene IDs
R
160
star
3

qqman

An R package for creating Q-Q and manhattan plots from GWAS results
HTML
152
star
4

biorecap

Retrieve and summarize bioRxiv preprints with a local LLM using ollama
R
36
star
5

twitterchive

Archive and analyze results from a Twitter search (**no longer maintained**)
R
33
star
6

adapters

Adapters for trimming
R
29
star
7

solarplot

Mitochondrial Solar Plot
R
25
star
8

mergelanes

Merge fastq files split over lanes
Shell
18
star
9

kgp

1000 Genomes Project Metadata R Package
R
18
star
10

msigdf

Molecular Signatures Database (MSigDB) in a data frame
R
16
star
11

hcop

HGNC Comparison of Orthology Predictions (HCOP)
R
14
star
12

deseq-to-fgsea

HTML
9
star
13

devnotes

Random programming notes and orphan scripts
Shell
8
star
14

workshops

Biological Data Science Workshops
CSS
7
star
15

covcalc

Coverage / read count calculator for sequencing experiments
R
6
star
16

docker101

Dockerfile
4
star
17

slimbioinfo

Lightweight Alpine-based Docker images for common bioinformatics tools
Dockerfile
4
star
18

Tverse

Meta package that installs my most commonly used packages
R
4
star
19

alpinist

Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.
Dockerfile
4
star
20

trailprofile

Charlottesville Area Trail Profiles
HTML
3
star
21

om..bcftools

outsider-module: bcftools
R
3
star
22

monthsheets

R
3
star
23

Tmisc

Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data and biological sequence data.
R
2
star
24

dstt-rmd

CSTE DSTT RMarkdown demo
HTML
1
star
25

rstudio-snippets

My custom RStudio snippets
1
star
26

rmarkdown-crossreferences

Cross-reference figures and tables using plain RMarkdown
1
star
27

rpdd

R package Docker demo
Shell
1
star
28

pipebox

Bioinformatics pipeline in a box (demonstration containerizing workflows with Docker)
R
1
star
29

drawmydata

A webpage for teaching that lets you make a dataset by clicking in a blank scatterplot
HTML
1
star
30

pairedends

Paired Ends Genomics
CSS
1
star
31

shc

shc - Generic shell script compiler
C
1
star
32

gi2017software

Software from GI2017
CSS
1
star
33

execorder

1
star
34

string2dna

R package to encode/decode strings as nucleotide sequences
R
1
star