Gergely J Szöllősi (@ssolo)
github

ssolo

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  • Global Rank 392,268 (Top 14 %)
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  • Registered about 12 years ago
  • Most used languages
    C++
         100.0 %
  • Location 🇭🇺 Hungary
  • Country Total Rank 694
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ALE

Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
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