Discover @sschmeier Open Source projects

Sebastian Schmeier (@sschmeier)

sschmeier

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Location 🇳🇿 New Zealand
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genomics

Sphinx documentation source for a computational genomics tutorial.

elearningcollection

A collection of random and not so random online learning materials for biology, computation, and bioinformatics

refseq2kraken

Download refseq-genomic data and prepare it for Kraken

boostnote-cli

A simple CLI for Boostnote notes.

beanplot

Beanplots on the command-line via Python

vcfcompile

Simple scripts to summarize variants.

distrobox-boxkit

A personalised distrobox image

workflow-crispr-grna-identification

A Snakemake workflow for guide RNA identification using CRISPRseek.

matplotlib_solarized

Simple python matplotlib colormaps based on the solarized color palette by Ethan Schoonover

mpRun

Simple script to run ONE command on SEVERAL files in parallel processes using multithreading.

metagenomics-scripts

genomics-tutorial

An introductory tutorial into genomics.