Discover @sofroniewn Open Source projects

Nicholas Sofroniew (@sofroniewn)

sofroniewn

Stars
224
Global Rank 112,748 (Top 4 %)
Followers 162
Following 3
Registered almost 11 years ago
Most used languages

Jupyter Notebook
59.1 %

JavaScript
22.7 %

Python
13.6 %

MATLAB
4.5 %
Location 🇺🇸 United States
Country Total Rank 26,135
Country Ranking

Jupyter Notebook
1,388

MATLAB
4,310

napari-training-course

Lectures for a napari training course

Jupyter Notebook

electron-johnny-five-examples

Example electron apps using johnny-five to control hardware

tutorial-scipy2021-bioimage-analysis-fundamentals

Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python

Jupyter Notebook

time-stream

Stream timeseries data to a file

lightning-stream

Render a lighting vizualizations using a stream

image-demos

Jupyter Notebook

awesome-bioimage-analysis-challenges

A list of awesome bioimage analysis challenges

tactile-coding

Notebooks to accompany sofroniew-vlasov-2015

Jupyter Notebook

psf

Compute microscopy point spread functions (psf)

Jupyter Notebook

2pRAM-paper

Notebooks accompanying the 2-photon random access mesoscope (2p-RAM) paper

Jupyter Notebook

ml-proteins

Exploring machine learning for protein structure prediction and design

Jupyter Notebook

waver

Wave simulations

svoboda-lab-legacy

Whisker guided navigation rig

mesoscope

Jupyter Notebook

unmixer

Package for unmixing flourophores

Jupyter Notebook

proteoscope

Generating images of protein subcellular localization from sequences

Jupyter Notebook

mVR-experiments

Jupyter Notebook

SingleCellDetect

Module for detecting a single cell from an image

ray-to-line

metaneuro

napari-segmentation

napari segmentation plugin

pytorch-segmentation

Image segmentation using deep networks

Jupyter Notebook

2P-RAM-pipeline

Jupyter Notebook