Miles (@sirselim)
github

sirselim

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  • Stars
    star
    233
  • Global Rank 109,269 (Top 4 %)
  • Followers 125
  • Following 37
  • Registered about 11 years ago
  • Most used languages
    HTML
         43.8 %
    R
         25.0 %
    Shell
         12.5 %
    JavaScript
         12.5 %
    CSS
         6.3 %
  • Location 🇳🇿 New Zealand
  • Country Total Rank 386
  • Country Ranking
    R
         28
    Shell
         44
    HTML
         57
    CSS
         70
    JavaScript
         1,302

Top repositories

1

jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
101
star
2

guppy_parameter_optimiser

A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
Shell
29
star
3

illumina450k_filtering

A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
25
star
4

diagnostics_exome_reporting

Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
Shell
14
star
5

Intro_to_GWAS

An introductory workshop to GWAS analysis using PLINK and R
R
12
star
6

methylation_EWAS_workshop

This is a basic EWAS tutorial, introducing basic concepts for analysing methylation data
HTML
9
star
7

WES_ShinyDiscover

A Shiny interface to filter and identify variants of interest from whole exome data
CSS
8
star
8

electronic_lab_notebook

This is an example of using blogdown, hugo and netlify to create and serve an electronic lab notebook.
HTML
5
star
9

GPU-musings

A collection of my thoughts around GPUs for genomic analysis and sequencing
4
star
10

presentation_and_design_resources

A small repo to hold useful resources for various courses I teach
3
star
11

sirselim.github.io

Personal website, blog and notebook
HTML
3
star
12

VCF-DART_example_exomes

A few example exomes in vcf format for testing the VCF-DART annotation and reporting tool
3
star
13

tSNE_plotting

some documentation for exploring the plotting of tSNE results from various data sources
HTML
3
star
14

lyritical

Analysis of song and artist lyrics in R - just for fun!!
R
2
star
15

singularity-genmod

A quick singularity recipe for genmod to facilitate use in variant annotation pipelines
2
star
16

cpg_annotate

small R script to provide quick annotation and gene lists for series of IlmnID's (450k probes)
R
2
star
17

vega-lite_integration_testing

A basic repository housing files detailing R and Python integration testing of vega-lite graphics
HTML
2
star
18

R_notebooks

A quick overview of using R Notebooks as a form of electronic lab book for bioinformatics
HTML
1
star
19

presentation_learnings_from_NI

My presentation for the AGTA 2016 conference to be held in Auckland (Oct 9-12th, 2016)
JavaScript
1
star
20

NvidiaGTC_2021

My 40min presentation for Nvidia Spring GTC 2021 on portable sequencing tech and Nvidia GPUs
JavaScript
1
star
21

Introduction-to-R-and-RStudio

An introductory overview of R and the fantastic IDE RStudio - rendered in Gitbook format
1
star
22

sirselim

1
star
23

autosomal_markers

1
star
24

Bookdown_Lab_Notebook

Testing bookdown as an electronic lab book option
HTML
1
star
25

data_carpentry_notes

Notes made available for various data carpentry sessions
R
1
star