Sebastian Rhode (@sebi06)
github

sebi06

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Top repositories

1

BioFormatsRead

This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.
Python
12
star
2

napari_zeiss

Use Napari Viewer to display CZI images
Python
10
star
3

napari-czann-segment

Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.
Python
7
star
4

PSF_XYZ_Bead_Fit

Automatic detection of beads for PSF measurement from Z-Stacks using python-bioformats.
Python
6
star
5

i2k_2022_zeiss

This repo contains all the material for the I2K 2022
Jupyter Notebook
5
star
6

czi_playground

Small python package to simplify reading CZI Image Metadata (*.czi)
Jupyter Notebook
5
star
7

czitools

This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
Python
5
star
8

Microscope_Camera_Compare

Python Tool to compare Camera Specifications
Python
2
star
9

czi_demos

Collection of scripts and notebooks demostrating how to read and process CZI image files. Still in beta phase ...
Jupyter Notebook
2
star
10

ZEN_Matlab

Tools and scripts connecting ZEN and MATLAB
MATLAB
1
star
11

readczi_with_metadata

Python
1
star