Sebastian Duchene (@sebastianduchene)
github

sebastianduchene

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Top repositories

1

NELSI

This is the repository for NELSI: Nucleotide Evolutionary rate Simulator
HTML
7
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2

phyloworkshop_2017

HTML
4
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3

tree_model_adequacy

Model adequacy using tree summary statistics in BEAST2
Shell
4
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4

summarise_importations

R
4
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5

ClockstaR

This is the home of the ClockstaR package
R
3
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6

cv_model_selection

Perl
3
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7

birth-death-sampling

3
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8

clockstarG

ClockstaR code for genomic data sets
R
2
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9

beast2_modeladequacy

beast2_modeladequacy
R
2
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10

Phyloworkshop_Melbourne_2016

2
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11

bacteria_genomic_rates_data

1
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12

beast-tutorials

TeX
1
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13

ancient_viruses

1
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14

marginal_likelihood_tempest

R
1
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15

virus_rate_variation

Jupyter Notebook
1
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16

phylo_xml_tools

Jupyter Notebook
1
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17

pacemaker_clustering_methods

Python
1
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18

thesis_appendix

1
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19

virus_time_dep_rates

R
1
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20

declining_titv_over_time

Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models
R
1
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21

phylodynamics_adequacy

Jupyter Notebook
1
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22

topo_clustering

Some code to test topology clustering in a clockstar-like framework
R
1
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