Discover @saketkc Open Source projects

Saket Choudhary (@saketkc)

saketkc

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Registered over 13 years ago
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Location 🇮🇳 India
Country Total Rank 8,397
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Scilab 5

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Julia
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Python
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239

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fos-proposals

💝 🐧 Archive of GSoC proposals

pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

gencode_regions

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

Jupyter Notebook

rna-seq-snakemake

Snakemake based pipeline for RNA-Seq analysis

pyseqlogo

Python package to plot sequence logos

pySCTransform

Python package to perform normalization and variance-stabilization of single-cell data

Jupyter Notebook

hatex

'h'omeworks, 'a'ssignments 'tex' for courses at USC

Jupyter Notebook

riboraptor

Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)

usc-vpn-linux-setup

Instructions for accessing USC's VPN on linux

moca

Ⓜ️ Tool for motif conservation analysis

notebooks

📗 Jupyter notebooks for demo/projects, now that github supports them

Jupyter Notebook

scilab_cloud

☁️ Scilab on Cloud

open-ehr-django

An Electronic Health Records System in *pure* Django.

kicad-ngspice

🔌 Some tweaks integrated in a python script to make kiCAD and ngspice compatible to each other

scRNA_NB_comparison

Scripts to reproduce the analyses in the paper "Comparison and evaluation of statistical error models for scRNA-seq"

dcpp.js

🔧 DC++ straight from your Browser! No Sharing Required!

motif-logos-matplotlib

Motif logos in matplotlib (POC)

Jupyter Notebook

variational-autoencoders-tf-eager

Variational autoencoders using Tensorflow's eager API

Jupyter Notebook

pivotal-tracker-email-wrapper

📪 Ruby Wrapper to assign tasks on pivotal through an email

sklearn-hogsvd

Scikit-learn compatible python implementation of HO-GSVD

multiZ-scripts

Snakefiles/Python scripts to create conservation tracks

covmuller

Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID

pyFLGLM

Jupyter Notebook

pyvirchow

Tools for whole slide image processing and classification

Jupyter Notebook

galaxy_tools

My Galaxy Wrappers

EE-546-project

Jupyter Notebook

bio-tricks

💉 Custom bio* stuff

biojs-genetic-variation-viewer

♻️ BioJS1.0 Component for visualising human gentic variations, GSoC2014

iclip-seq-snakemake

Snakemake based pipeline for analysing iCLIP-Seq data

brewer

Homebrew Personal recipes

ug_acads

UG Acads IIT B Open Sourced !

blog-archive

ribo-seq-snakemake

Snakemake pipeline for Ribo-Seq analysis

blog

Jupyter Notebook

review

Review of Scientific Papers

rnn-cds-prediction

Prediction of CDS regions using RNNs

resume

overleaf-cloner

Clone your Overleaf.com projects at once!

Jupyter Notebook

haskell99

Haskell 99 Problems' Solutions

machine_learning

My experiments with ML

math-501-project

📓 Optimal Control Design of a Reparable Multistate system

moodi-hack

talks

Monologues. mostly.

moodle-stack

Allows you to download moodle files for all your courses. This will grow into a website later

moca_web

Ⓜ️ Code for MOtif Conservation Analysis

Jupyter Notebook

points-of-significance

Python notebooks for Nature's Point of Significance collection: http://www.nature.com/collections/qghhqm/pointsofsignificance

Jupyter Notebook

pivotal_email_tracker_bot

Send Stories to pivotal through emails !

comp-bio

iitb-library-sms-interface

Sends automated SMSes reminding you of due dates from IITB moodle/asc

re-ribo-smk

Snakemake pipeline for end-to-end Ribo-seq analysis

Jupyter Notebook

tcga-python

Python Wrapper for TCGA API

dropbox_on_sms

Access DropBox files using SMS

SPOJ_haskell

HAskel Solutions for SPOJ

scrape_ebi

Automate Submissions To EBI portals

pyfastnbfit

Fast fitting for counts data using Minka's algorithm

Jupyter Notebook

ideone-chrome-extension

A chrome extension that allows running code on ideone simply by selecting the text in a browser window

Google-AppEngine-Projects

All Google-AppEngine Projects that I did. Try out the links at foldername.appspot.com

dotfiles

Collection of dotfiles

predicting-cds-rnn

Jupyter Notebook

SlideShare-Instants

Instant Search for SlideShare Documents

protein_loop_closure

Protein Loop Closure Algorithm

riddler

538 -- We all need stimulants.

Jupyter Notebook

SlideShare-Instant

Instant Search for SlideShare Documents

pyjoyplot

POC for a 'joyplot' using matplotlib

Jupyter Notebook

math-screening-solutions

📗 🎓 Solutions for MATH Screening Exams

rss-graduate-diploma-solutions

Solutions to Royal Statistical Society's Graduate Diploma in Statistics Examination