Rory Kirchner (@roryk)
github

roryk

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Top repositories

1

ipython-cluster-helper

Tool to easily start up an IPython cluster on different schedulers.
Python
149
star
2

tiny-test-data

Super small biological datasets for unit testing
Python
60
star
3

bcbio.rnaseq

Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway analysis for bcbio RNA-seq runs
Clojure
25
star
4

junkdrawer

collection of small scripts or how-tos that don't fall under a separate project
Python
21
star
5

Delicious

Source code to Delicious bookmarking site, pull requests welcome
Python
17
star
6

quantum-diceware

Diceware random password generation using the ANU quantum random number server as the randomness source
AGS Script
17
star
7

bipy

DEPRECATED Lightweight bioinformatics pipeline tools using iPython
Python
14
star
8

spp-idr

Wrappers around NGS peak callers to both call peaks and run IDR
Python
11
star
9

Quarkeon-Express

HParty 2011 hackathon project
Objective-C
3
star
10

fusion-gene-blacklist

blacklist of fusion genes
Python
3
star
11

chipseq-greylist

Python implementation of the GreyListChIP Bioconductor package
Python
3
star
12

python-gcon

Python API for interacting with several genomics storage solutions.
Python
2
star
13

bcbio-test-data

2
star
14

singlecell

single-cell data analysis incubator
Python
2
star
15

PitchWeather

Links Weather Underground weather data to a PitchFx database
Python
2
star
16

gffutils-utils

Collection of one off type scripts using a gffutils database
Python
2
star
17

rna-editing-classifier

Classify A->I RNA editing events from RNA-seq variants
Shell
2
star
18

miso-hg38-events

hg38 event level annotations for use with MISO, translated from hg19 from Crossmap.
2
star
19

singlecell-barcodes

whitelisted singlecell barcodes and information regarding where molecular/sample/cellular barcodes are in each read, for various singlecell protocols
2
star
20

zinbwave-deseq2-indrop

HTML
1
star
21

bcbio-nextgen-test-data

Unit test data for bcbio-nextgen
1
star
22

salmon-cwl

Example CWL workflow for running Salmon
1
star
23

spliced-blog

data for the -spliced- blog
1
star
24

simple-rnaseq-sim

1
star
25

spacemacs-private

private layers for spacemacs
Emacs Lisp
1
star
26

bik-manipulation

Training set of manipulated images from open access publications identified by Elisabeth Bik
1
star