Discover @roryk Open Source projects

Rory Kirchner (@roryk)

roryk

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Registered almost 14 years ago
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AGS Script 5.6 %

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Location 🇺🇸 United States
Country Total Rank 18,479
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AGS Script 20

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ipython-cluster-helper

Tool to easily start up an IPython cluster on different schedulers.

tiny-test-data

Super small biological datasets for unit testing

bcbio.rnaseq

Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway analysis for bcbio RNA-seq runs

junkdrawer

collection of small scripts or how-tos that don't fall under a separate project

Delicious

Source code to Delicious bookmarking site, pull requests welcome

quantum-diceware

Diceware random password generation using the ANU quantum random number server as the randomness source

bipy

DEPRECATED Lightweight bioinformatics pipeline tools using iPython

spp-idr

Wrappers around NGS peak callers to both call peaks and run IDR

Quarkeon-Express

HParty 2011 hackathon project

fusion-gene-blacklist

blacklist of fusion genes

chipseq-greylist

Python implementation of the GreyListChIP Bioconductor package

python-gcon

Python API for interacting with several genomics storage solutions.

bcbio-test-data

rna-editing-classifier

Classify A->I RNA editing events from RNA-seq variants

PitchWeather

Links Weather Underground weather data to a PitchFx database

singlecell

single-cell data analysis incubator

gffutils-utils

Collection of one off type scripts using a gffutils database

miso-hg38-events

hg38 event level annotations for use with MISO, translated from hg19 from Crossmap.

singlecell-barcodes

whitelisted singlecell barcodes and information regarding where molecular/sample/cellular barcodes are in each read, for various singlecell protocols

zinbwave-deseq2-indrop

bcbio-nextgen-test-data

Unit test data for bcbio-nextgen

salmon-cwl

Example CWL workflow for running Salmon

simple-rnaseq-sim

spliced-blog

data for the -spliced- blog

spacemacs-private

private layers for spacemacs

bik-manipulation

Training set of manipulated images from open access publications identified by Elisabeth Bik