Robert Syme (@robsyme)
  • Stars
    star
    71
  • Global Rank 260,650 (Top 10 %)
  • Followers 88
  • Following 15
  • Registered over 15 years ago
  • Most used languages
    Ruby
    36.8 %
    Perl
    15.8 %
    Go
    15.8 %
    JavaScript
    10.5 %
    Dart
    5.3 %
    Lua
    5.3 %
    Python
    5.3 %
    Shell
    5.3 %
  • Location πŸ‡¨πŸ‡¦ Canada
  • Country Total Rank 6,984
  • Country Ranking
    Perl
    41
    Dart
    470
    Lua
    472
    Ruby
    728
    Go
    873
    Shell
    2,780

Top repositories

1

nextflow-annotate

Workflows I find helpful for fungal genome annotation
Perl
20
star
2

nf-repeatmasking

Nextflow workflow for automatic repeat detection, classification and masking
Perl
12
star
3

succinctBitSet

Fast rank and select operations on indexed bitsets.
Go
4
star
4

obo

A parser for the OBO flat file format
Ruby
4
star
5

nf-annotate

Fungal genome annotation pipeline
Lua
3
star
6

robsyme.com

Source for personal site
JavaScript
2
star
7

wavelettree

Rough sketches of wavelet trees for providing fast rank queries on non-binary alphabets.
Go
2
star
8

mitehunter

A clone of MITE-Hunter from Yujun Han and Susan Wessler - used for bugfixing
Perl
2
star
9

bioruby-chado

A library that allows you to pull ruby objects out of a Chado-schema database
Ruby
2
star
10

workflows-proteogenomics

Versioned, shareable and replicable workflows for proteogenomics.
2
star
11

cegma-docker

Docker container for running CEGMA
Shell
2
star
12

polymer-region-selector

A widget that selects max and min bounds on a genomic sequence of a given length.
Dart
2
star
13

gortex

Tool to pull out species-specific sequence from coloured graphs generated by Cortex-var
Go
2
star
14

docker-REPET

The REPET package in a container.
2
star
15

GeneMark-Extractor

Tools for taking GeneMark output and pulling out the relevant sequences from the original fasta file.
Ruby
1
star
16

busco

https://gitlab.com/ezlab/busco
Python
1
star
17

acnfp-trans-counter

A very quick and dirty project to help out a colleague
Ruby
1
star
18

bioruby-lazyblastxml

A plugin that allows you to parse large blast XML output files lazily, reading only what you need.
Ruby
1
star
19

fasta_util

An easy way of performing some common operations on fasta files
Ruby
1
star
20

Parastagonospora_nodorum_SN15

Storage and edit history for ACNFP gene models.
Ruby
1
star
21

comparative-sketch

A very quick and dirty sketch to quickly visualise large-scale genome comparisons in non-model organisms. Also might be handy for creating SVG drafts which can be cleaned up in Inkscape for publication.
JavaScript
1
star