Robert Edgar (@rcedgar)
github

rcedgar

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  • Stars
    star
    255
  • Global Rank 101,592 (Top 4 %)
  • Followers 101
  • Registered over 10 years ago
  • Most used languages
    C++
         50.0 %
    Python
         28.6 %
    Roff     7.1 %
    C
         7.1 %
    HTML
         7.1 %

Top repositories

1

muscle

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
C++
135
star
2

urmap

URMAP ultra-fast read mapper
C++
39
star
3

palmscan

C++
18
star
4

palmdb

Database of virus RdRP barcode sequences
12
star
5

newick

Manipulate and generate figures for trees in Newick format
C++
11
star
6

syncmer

Validation of sycnmers compared to minimizers
C++
10
star
7

spades_circular_contigs

Python script to identify circular contigs from SPAdes assembler.
Python
7
star
8

taxxi

Taxonomy cross-validating by identity
HTML
4
star
9

rdrp_tree_experiments

Code, data and results for Muscle5 ensemble experiments on RdRp genus and phylum trees
Roff
4
star
10

renomad

Implementation of NOMAD (https://doi.org/10.1101/2022.06.24.497555)
C++
4
star
11

circuclust

Clustering and alignment for circular sequences
C++
3
star
12

palm_annot

Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
Python
3
star
13

jupiter

Generate "Jupiter" plots for circular genomes
Python
2
star
14

usearch_old_binaries

Executable files for usearch versions 5 through 11, donated to the public domain
1
star
15

balifam

Protein multiple sequence alignment benchmark
1
star
16

qscore

Compares a multiple alignment with a reference and reports accuracy scores.
C
1
star
17

simple_paired_read_simulator

A simple paired-read simulator in stand-alone Python2
Python
1
star