Discover @pjotrp Open Source projects

Pjotr Prins (@pjotrp)

pjotrp

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guix-notes

This repo has moved to https://gitlab.com/pjotrp/guix-notes Notes on Guix

bioinformatics

Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics

biolib

BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages

nix-no-root

Empowered Nix/Guix without root

guix

blastxmlparser

Fast big data XML parser and library, written in Ruby

rq

biogems.info

Tools for keeping track of biogems. Moved to https://git.thebird.nl/free/biogems.info

bioruby-table

Swiss knife of tabular data

bigbio

Big data bioinformatics repository

bioruby-alignment

TODO: one-line summary of your gem

cfruby

bioruby-gff3-plugin

GFF3 plugin for BioRuby - allows parsing big data GFF3

once-only

Execute scripts only once when input is unchanged

rqtl

R/qtl mapping software

NA-BioRuby.org

New age BioRuby website

bioruby-rdf

Bioinformatics parsing and filtering data for triple-stores

EMBOSS-biolib

Git import of EMBOSS CVS repository for Biolib

deploy

Pjotr's deployment tools

sparql-racket

Racket Sparql module

bioruby-logger-plugin

bioruby-pipeline

TODO: one-line summary of your gem

rqtl-mqm

R/QTL with MQM support

cmake-support

CMake scripts for BioLib and ASciLib

linux-at-university-of-tennessee

Using Linux at the University of Tennessee

qnorm

High performance quantile normalization (for BioLib)

bioruby-exominer

Mining publications for gene names

yaj

Pilot project for Biohackathon 2017

ascilib

A science library - SWIG mappings

libsequence

The libsequence library (for BioLib)

ruby-odgi

Ruby bindings for ODGI

genfrag

TDF predictor - copy of Rubyforge site

bio-locus

biotools

A set of tools and filters

bionix

Bio packages for the Nix package system

heyu-run

Heyu/X10 electrical appliances runner and state-machine that can run on OpenWRT wifi routers

bioruby-affy

TODO: one-line summary of your gem

qtl

biolib_hpc

High performance computing for Big Data

Scalability

Scalability tests

gemma-annotate

Annotation tools for GEMMA

biolib_staden_io_lib

Biolib: Git copy of the SVN repository hosted as sourceforge

Cross-language-interfacing

Testing cross-language interfaces

biopp

A reference repository of the Bio++ project (no history)

orgtexer

Mixing Org mode with LaTeX

Panorama-talk

bio---numcalc

Trial repository for numcalc

Pjotr-s-Debian-packages

regressiontest

Tools for regression testing

guix-relocate

bioruby-foo

TODO: one-line summary of your gem

samtools

SAM tools repository for BioLib

lepra2

Lepra2 Rails app.

rq.deb

Debian package for rq (Ruby Queue)

OSM

Openstreetmap tools and styles

BioNode

BioNode Debian based VM tools

ptodo

Command line todo organizer (interacts with remind and org-mode)

bioruby-core-plugin

Bioruby core plugin - adds/replaces core functionality

bioruby-qtlHD

TODO: one-line summary of your gem

racket-bibtex

Bibtex mangler in Racket (uses Pandoc json)

bioruby-support

Supporting files and scripts for the Bioruby project

swig2doc

Convert SWIG generated to documentation

guix-relocatable-binary-packages