Discover @pcahan1 Open Source projects

Patrick Cahan (@pcahan1)

pcahan1

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singleCellNet

SingleCellNet: classify single cells across species and platforms

CellNet

CellNet: network biology applied to stem cell engineering

epoch

gene regulatory network reconstruction from scRNA-Seq

PySingleCellNet

singleCellNet in Python

cellnetr

CellNet: network biology-based computational platform to assess establishment of cell type specific gene regulatory networks in user-provided gene expression profiles

CellNet_Cloud

Documentation for launching CellNet in the cloud as a web application, and script for local fastq down-sampling.

Web_Framework

Web_Framework (a.k.a Radiator) is a cloud-backed computational framework that addresses common barriers to deploying compute-intensive bioinformatics tools

PACNet

Platform-agnostic CellNet

oneSC

gene regulatory networks that generate realistic single cell transcriptomic data