Paul Stothard (@paulstothard)
github

paulstothard

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  • Stars
    star
    186
  • Global Rank 126,386 (Top 5 %)
  • Followers 39
  • Following 2
  • Registered about 5 years ago
  • Most used languages
    Perl
         37.5 %
    CSS
         12.5 %
    Python
         12.5 %
    Shell
         12.5 %
    Java
         12.5 %
    Vim Script
         12.5 %
  • Location 🇨🇦 Canada
  • Country Total Rank 4,382
  • Country Ranking
    Perl
         37
    Vim Script
         490
    Java
         545
    CSS
         1,686
    Shell
         2,159

Top repositories

1

sequence_manipulation_suite

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
55
star
2

cgview

CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Java
36
star
3

helpful_commands

Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
33
star
4

cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Perl
27
star
5

helpful_links

Links to resources related to bioinformatics and data analysis.
20
star
6

ncbi_search

This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.
Perl
7
star
7

fast-pptx

Generate Markdown and PowerPoint slides from a folder of images, code snippets, and other files.
Shell
3
star
8

document-builder

Produces nicely formatted PDF and HTML documents from Markdown source files.
CSS
2
star
9

dotfiles

Configuration files for bash, tmux, and vim, and a Brewfile for installing software on macOS.
Vim Script
2
star
10

genotype_conversion_file_builder

A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
Perl
1
star
11

sort_markdown_by_headings

Sorts a Markdown file based on headings.
Python
1
star