Patrick Bryant (@patrickbryant1)
github

patrickbryant1

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Top repositories

1

Umol

Protein-ligand structure prediction
Jupyter Notebook
181
star
2

EvoBind

In silico directed evolution of peptide binders with AlphaFold
Jupyter Notebook
82
star
3

SpeedPPI

Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
Python
70
star
4

AFProfile

Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
Python
62
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5

Cfold

Structure prediction of alternative protein conformations
Jupyter Notebook
51
star
6

MoLPC

Modelling of Large Protein Complexes
Jupyter Notebook
34
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7

TransPep

Learning biological features of signal peptides with transformer neural networks.
Python
3
star
8

MHCII

Code for predicting the binding affinity of different MHC-II complexes to peptides of varying lengths in terms of ic50.
Jupyter Notebook
2
star
9

COVID19.github.io

Supervised machine learning for decoposing decision making in the COVID19 outbreak.
Jupyter Notebook
2
star
10

binder_design

Jupyter Notebook
2
star
11

patrickbryant1.github.io

HTML
1
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12

OXMatch

A simple script for matching sequences from two different MSAs based on the OX identifiers resulting from an hhblits search.
Python
1
star
13

epidemic_net

Models the spread of COVID19 on a social network.
Python
1
star
14

infection_biology_ws

Exercises for AI Applications in Infection Biology
Jupyter Notebook
1
star
15

ptb_rnn

A recurrent neural network of stacked LSTMs that predict text sequences using the Penn Treebank dataset.
Python
1
star
16

ageing_of_blood_and_brain

Assessing the relationship between ageing and changes in the human blood and brain methylomes.
Python
1
star