Discover @nick-youngblut Open Source projects

Nick Youngblut (@nick-youngblut)

nick-youngblut

Stars
120
Global Rank 180,977 (Top 7 %)
Followers 55
Registered almost 12 years ago
Most used languages

Perl
40.0 %

Python
35.0 %

R
15.0 %

Jupyter Notebook
10.0 %
Location 🇺🇸 United States
Country Total Rank 48,640
Country Ranking

Perl
882

R
4,475

Python
8,698

gtdb_to_taxdump

Convert GTDB taxonomy to NCBI taxdump format

traitar3

From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)

MGSIM

Metagenome read simulation of multiple synthetic communities

MFEprimer_linux

A fast thermodynamics-based program for checking PCR primer specificity (setup.py: linux install)

CLdb

Create a local pan-genome CRISPR database

pushmsg

IPython magic function to send notifications with Pushbullet

seqDB_tools

commands for interacting with public sequence databases

Tax4Fun

unofficial Tax4Fun repo

pop_genome

Population genomics scripts - many build upon ITEP

tree_edit

tools for manipulating phylogenies

sgepy

SGE job submission & monitoring

misc_perl

miscellaneous perl scripts that haven't yet been migrate to another repo

gtl_read_filter_pipeline

Illumina read filtering pipeline for the GTL project

seq_tools

Miscellaneous tools for working with sequences

HTSSIP

An R package for analyzing high throughput sequence stable isotope probing data

FORAGer

Finding Orthologous Reads and Genes

metagenome_assembly

Various scripts for metagenome assembly

snakemakeNB

Create snakemake rules to run Jupyter/Ipython Notebooks

Jupyter Notebook

consenTRAIT

Phylogenetic conservatism of functional traits in microorganisms

SIPSim

A toolset for simulating high resolution stable isotope probing data

Jupyter Notebook