Nils Homer (@nh13)
github

nh13

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  • Stars
    star
    338
  • Global Rank 80,835 (Top 3 %)
  • Followers 346
  • Following 16
  • Registered over 13 years ago
  • Most used languages
    C
         35.3 %
    Python
         35.3 %
    PHP
         5.9 %
    Scala
         5.9 %
    C++
         5.9 %
    Rust
         5.9 %
    Assembly
         5.9 %

Top repositories

1

DWGSIM

Whole Genome Simulator for Next-Generation Sequencing
C
80
star
2

snakeparse

Making Snakemake workflows into full-fledged command line tools since 1999.
Python
51
star
3

pbgzip

Parallel Block GZIP
Assembly
46
star
4

fqme

Rust
22
star
5

TMAP

Torrent Mapping Alignment Program
C
19
star
6

basespace-invaders

A collection of tools to work with Illumina's basespace
Python
13
star
7

gedmatch-tools

Tools and Python API for GEDMatch Genesis (https://genesis.gedmatch.com)
Python
12
star
8

BFAST

BFAST: the Blat-like Fast Accurate Search Tool
C
10
star
9

snakemake-pytest

Snakemake with pytest example
Python
9
star
10

callerpp

A simple consensus caller based on partial order alignment with spoa
C++
7
star
11

SRMA

Short-read Micro-Aligner
C
5
star
12

ksw

Ksw: (interactive) smith-waterman in C
C
4
star
13

bfx-qc-reporter

Bioinformatics QC Reporting Tools
Python
4
star
14

read-structure-examples

Example Read Structures for BAM <-> FASTQ
3
star
15

bfx-examples

Bioinformatics Example Repository
Scala
3
star
16

bioinformatic-worfklow-idioms

Common idioms and their implementation across Bioinformatic workflow languages
2
star
17

flightmemory_exporter

PHP
2
star
18

DATA

1
star
19

filesize

Large File Support Testing for Mac OS X Lion
C
1
star
20

euler

Solutions to http://projecteuler.net
Python
1
star
21

snakeskin

Making snakemake wrappers cool again
1
star