Pierre Marijon (@natir)

Top repositories

1

yacrd

Yet Another Chimeric Read Detector
Rust
67
star
2

fpa

Filter of Pairwise Alignement
Rust
40
star
3

rustyread

A long read simulator based on badread idea
Jupyter Notebook
21
star
4

vcf2parquet

Convert vcf in parquet
Rust
17
star
5

nuc2bit

Rust
14
star
6

Redirector_doi_sci-hub

Redirector rules to convert any sci-hub link or doi link to valid sci-hub domaine.
9
star
7

variantplaner

A tool kit to manage many variant on desktop computer
Python
7
star
8

fastx

Rust
6
star
9

bench_rev_comp

C++
5
star
10

ragroc

A webapp to generate random dna and perform reverse complement
Rust
5
star
11

cocktail

Rust
5
star
12

fbio

Friday's BioInformatics Optimizations
Rust
4
star
13

ned-et-les-maki

Java
4
star
14

snakemake_ba

Snakemake Benchmark Analysis
Python
4
star
15

in_place_fastx

Rust
4
star
16

knot

KNOT: Knowledge Network Overlap exTraction is a tool for the investigation of fragmented long read assemblies.
HTML
4
star
17

blog

HTML
3
star
18

ncovfrost

3
star
19

biommap

A vcf parser that use memory mapping to get high performance.
Rust
3
star
20

mapping2barcode

Rust
3
star
21

sequence_back

Rust
2
star
22

copier-rust

Rust copier template
Jinja
2
star
23

thesis

TeX
2
star
24

kmrf

Kmer base Read Filter
Rust
2
star
25

set_count

C++
2
star
26

dna_mix

Rust
1
star
27

tr_gfa

Rust
1
star
28

map2dotplot

HTML
1
star
29

linktree

A json configurable linktree.
Rust
1
star
30

fast_bench

Rust
1
star
31

copier-yew

SCSS
1
star
32

crazyqc

Rust
1
star
33

cabanis

Rust
1
star
34

etc

Shell
1
star
35

yacrd_RNA

Jupyter Notebook
1
star
36

ovide

OVerlap InDEx
Rust
1
star
37

br

Brutal Rewrite a long read corrector
Rust
1
star
38

project-diploid-assembly-UAB-graph-analysis

Rust
1
star
39

igusharray

Rust
1
star
40

cam_bot

Rust
1
star
41

lcd

Rust
1
star
42

pcon

Prompt COuNter
Rust
1
star
43

copier-python

Jinja
1
star
44

pcon_kmrf

Shell
1
star
45

page_perso

HTML
1
star