Discover @mukamel-lab Open Source projects

@mukamel-lab

mukamel-lab

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Registered over 9 years ago
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Python
57.1 %

MATLAB
14.3 %

Jupyter Notebook
14.3 %

PHP
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Location 🇺🇸 United States
Country Total Rank 66,121
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MATLAB
844

CellSort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

snmcseq

Tools for computational analysis of single nuclei methylC-Seq data, as described in Luo, Keown et al. (2017)

EpiAttend

Single cell epigenome modeling

mop

Multiomics Processing

SingleCellFusion_Loompy-Obsolete

Methods for integrating multimodal single cell sequencing data, including transcriptome (RNA-Seq) and epigenome (DNA methylation, ATAC-Seq)

BICCN-Mouse-MOp

Analysis notebooks for BICCN mouse primary motor cortex project.

Jupyter Notebook

slavseq_browser

IGV browser for viewing slav-seq data