Matthias Lorthiois (@mlorthiois)
github

mlorthiois

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Top repositories

1

TransforKmers

[WIP] A task-agnostic facility to pretrain/finetune/use a Transformer based model to classify your biological sequences.
Jupyter Notebook
4
star
2

ANNEXA

Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs), and count gene/transcript expression levels.
Python
4
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3

REPL-region.nvim

Neovim plugin powered by treesitter to run a code region in a REPL shell.
Lua
3
star
4

macfab

Snakemake pipeline to benchmark different annotations
Python
2
star
5

markdown-report-pdf

Use pandoc to generate a PDF report from a Markdown file.
TeX
2
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6

dotfiles

Personnal dotfiles (ansible, zsh, neovim, kitty, ...).
Lua
1
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7

ml_project

ML Project
HTML
1
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8

Aho-Corasick

C implementation of Aho-Corasick algorithm
C
1
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9

gene-annotation-summary

HTML
1
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10

BioTools

Personal scripts and collections for Bioinformatics analysis
Python
1
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