MISHIMA, Hiroyuki (@misshie)
github

misshie

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  • Stars
    star
    107
  • Global Rank 196,973 (Top 7 %)
  • Followers 39
  • Following 45
  • Registered over 15 years ago
  • Most used languages
    Ruby
         83.3 %
    Jupyter Notebook
         8.3 %
    Shell
         8.3 %
  • Location 🇯🇵 Japan
  • Country Total Rank 4,139
  • Country Ranking
    Shell
         262
    Ruby
         436
    Jupyter Notebook
         781

Top repositories

1

ngsdat2

NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
Shell
42
star
2

bioruby-ucsc-api

Ruby UCSC API: An API for the UCSC Genome Database
Ruby
19
star
3

Workflows

Pwrake for bioinfomatics workflows using GATK and Dindel
Ruby
12
star
4

bioruby-genomic-interval

a BioRuby plugin: handling genomic interavals and overlaps
Ruby
5
star
5

hgvd2annovar

Convert a HGVD table file to an ANNOVAR generic DB file
Ruby
5
star
6

RareDiseaseInformatics

https://misshie.github.io/rdinfo2020/
Jupyter Notebook
5
star
7

bioruby-dbsnp

Utilities to handle dbSNP bitfield information
Ruby
4
star
8

bio-virtuoso

A Doker container for a wrapper server of the Virtuoso database engine and data-containers bioinfomatics databases
Ruby
4
star
9

docker-ucsc-blat

Dockerfiles for UCSC BLAT servers with hg19 and hg38 reference genomes
4
star
10

UCSC2VCF

Convert UCSC dbSNP to VCF files
Ruby
3
star
11

UCSCBin

Utilities for UCSC Bioinformatics Genome Browser ( http://genome.ucsc.edu ) including calculation of a BIN index from a genomic interval to speed-up SQL queries, and conversion between 1-based full-closed (for humans) and 0-based half-open (for machienes) intervals
Ruby
2
star
12

avsummary

GATK & ANNOVAR workflow tool
Ruby
1
star
13

bioruby-rakehelper

A BioRuby plugin: helper methods simplifying rakefiles
Ruby
1
star