Matt Shirley (@mdshw5)
github

mdshw5

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  • Stars
    star
    592
  • Global Rank 49,643 (Top 2 %)
  • Followers 206
  • Following 244
  • Registered over 13 years ago
  • Most used languages
    Python
         100.0 %
  • Location 🇺🇸 United States
  • Country Total Rank 13,108
  • Country Ranking
    Python
         2,246

Top repositories

1

pyfaidx

Efficient pythonic random access to fasta subsequences
Python
411
star
2

fastqp

Simple FASTQ quality assessment using Python
Python
104
star
3

simplesam

Simple pure Python SAM parser and objects for working with SAM records
Python
59
star
4

hamstring

Tools for generating and decoding error-correcting DNA barcodes
Python
15
star
5

strandex

Sample an approximate number of reads from a fastq file without reading the entire file
Python
11
star
6

transcoorder

Convert SAM/BAM files with transcript coordinates to SAM files with genomic coordinates
Python
3
star
7

mpmd

Configuration and such for my Monoprice mini delta printer
1
star
8

galaxy-json-data-source

Data source tool for importing multiple datasets using a JSON schema
Python
1
star
9

sra-tools-galaxy

NCBI SRA toolkit Galaxy package and tool wrappers
Python
1
star
10

tripod-web

web application for triPOD detection
Python
1
star