Discover @markolchanyi Open Source projects

Mark Olchanyi (@markolchanyi)

markolchanyi

Stars
13
Global Rank 834,067 (Top 29 %)
Followers 1
Following 2
Registered over 7 years ago
Most used languages

Java
40.0 %

Python
40.0 %

Julia
20.0 %
Location 🇺🇸 United States
Country Total Rank 139,947
Country Ranking

Julia
1,391

3D-Neuronal-Segmentation

Faster 3D segmentation algorithm ideal for image stacks of cortical neurones implemented as a ImageJ plugin, using slice-by-slice canny edge canny detection followed by specialised two-pass connected-component component labelling. Somas are labelled using openCV's blob detector and filtered/localised using distance-based clustering. BRISK feature detection is used to perform evaluation with existing manual or semi-manual tracing platforms.

AutoTracer

Automated neuronal tracing platform for 3D image stacks. Implements algorithms from openCV and ImageJ as well as a A* search for fast automated segmentation

CRSEG_dev

bci-hackathon

MIT Brain Computer Interface (BCI) hackathon code

MLSL_Julia

A Julia implementation of Stochastic Global Optimization with Multi-Level Single Linkage