Guanliang MENG (@linzhi2013)
github

linzhi2013

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  • Stars
    star
    149
  • Global Rank 154,504 (Top 6 %)
  • Followers 58
  • Following 23
  • Registered almost 11 years ago
  • Most used languages
    Python
         85.7 %
    Shell
         14.3 %
  • Location 🇨🇳 China
  • Country Total Rank 19,489
  • Country Ranking
    Shell
         445
    Python
         9,461

Top repositories

1

MitoZ

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Shell
112
star
2

taxonomy_ranks

To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)
Python
9
star
3

gbseqextractor

Extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file.
Python
8
star
4

msaconverter

msaconverter is a tool to convert a multiple sequence alignment into different format with Biopython (http://www.biopython.org/)
Python
7
star
5

extract_codon_alignment

To extract some codon positions (1st, 2nd, 3rd) from a CDS alignment.
Python
2
star
6

msa_cigars

A tool to get the CIGARs of a multiple sequence alignment.
2
star
7

extractfq

Extract some fastq reads from the beginning of the files
Python
2
star
8

Virusfishing

Virusfishing is a virus screening pipeline for 1000 Insect Transcriptome Evolution (1KITE) project to search viruses, construct viral genomes and screen for the expressed virus genes and discover viral splicing patterns. Virusfishing also can be used in other next generation sequencing data.
2
star
9

wdl_dep_resolution

to reuse the existing WDL pipelines
1
star
10

extract_fasta_seq

To extract specific fasta sequences from a fasta file. By Guanliang MENG, see https://github.com/linzhi2013
1
star
11

bold_identification

To identify taxa of given sequences via BOLD system (http://www.boldsystems.org/index.php)
Python
1
star
12

polish_genbank

Check for the internal stop codon, then substitute the internal stop codon with NNN.
1
star