Kristian Ullrich (@kullrich)
github

kullrich

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  • Stars
    star
    54
  • Global Rank 322,205 (Top 12 %)
  • Followers 23
  • Following 14
  • Registered over 10 years ago
  • Most used languages
    HTML
         33.3 %
    Python
         33.3 %
    C++
         16.7 %
    C
         8.3 %
    Roff     8.3 %
  • Location ๐Ÿ‡ฉ๐Ÿ‡ช Germany
  • Country Total Rank 17,555
  • Country Ranking
    Roff     83
    HTML
         948
    C++
         2,961
    Python
         4,939
    C
         5,747

Top repositories

1

snpless-nf

snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.
HTML
14
star
2

bio-scripts

collection of scripts for bioinformatic analysis
Python
8
star
3

kakscalculator2

Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
C++
7
star
4

orthomap

orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
Python
6
star
5

MSA2dist

MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
C++
4
star
6

oggmap

oggmap is a python package to extract orthologous maps (short: orthomap or in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Oggmap results (gene ages per orthologous group) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
Python
4
star
7

scTEI

add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects
HTML
2
star
8

CRBHits

[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
HTML
2
star
9

EuroBioc2022_MSA2dist

Slide presentation and material for the software demo "Downstream Analysis of Synteny Networks with MSA2dist"
HTML
1
star
10

literal-dists

Convert a FASTA alignment with ambiguous nucleotides to literal distance matrix
C
1
star
11

dagchainer

Fork of the DAGchainer project https://sourceforge.net/projects/dagchainer
Roff
1
star
12

t2gGTF

extract transcript to gene table for DEG
Python
1
star