Kai Blin (@kblin)
github

kblin

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Top repositories

1

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers
Python
946
star
2

ncbi-acc-download

Download files from NCBI Entrez by accession
Python
107
star
3

vim-fountain

A VIM syntax highlighting plugin for the Fountain screenplay format
Vim Script
23
star
4

mockaioredis

Mock library to replace aioredis during unit tests (RETIRED)
Python
15
star
5

covid-spike-classification

Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.
Python
11
star
6

supybot-gsoc

A collection of patches used to pimp gsocbot, the supybot of #gsoc
Python
7
star
7

bioperl-hmmer3

BioPerl modules for HMMER3
Perl
6
star
8

fancy-prompt

An /etc/profile.d settings file creating a fancy prompt.
Shell
6
star
9

merge-gbk-records

Merge multiple GenBank records using a defined spacer sequence
Python
6
star
10

svgene

SVGene, an SVG gene cluster visualization library in JavaScript
JavaScript
6
star
11

glimmerhmm

GlimmerHMM git repository
C
5
star
12

flask-downloader

Allow a Flask web app to download files on behalf of the user
Python
5
star
13

nrpys

Python bindings for nrps-rs
Rust
4
star
14

nrps-rs

A Rust reimplementation of NRPSPredictor2
Rust
4
star
15

gecco2as

Small script to convert GECCO result tables into antiSMASH sideload JSON files
Python
4
star
16

around-the-world

Code to run the beaglebone-driven world map for Around the World in 80 Days
JavaScript
3
star
17

py3-kkdcp

Python 3 asyncio Kerberos Key Distribution Center Proxy server
Python
3
star
18

patscanui

A comfortable web interface for PatScan
CSS
2
star
19

go-kkdcp

Go implementation of a Kerberos Key Distribution Center Proxy
Go
2
star
20

rpi-temp-monitor

1-wire temperature monitoring for the Raspberry Pi
JavaScript
1
star
21

mentor-summit-2019

A central place to keep notes, the schedule etc. of the 2019 GSoC mentor summit
1
star
22

bioinf-helperlibs

A library of bioinformatics-related helper functions
Python
1
star
23

rust-kkdcp

A Rust implementation of MS-KKDCP
1
star
24

ncbi-entrez-error-messages

A collection of error messages returned by NCBI Entrez
1
star
25

asproxy

Small reverse proxy to sidestep some networking issues.
Go
1
star
26

docker-debian

Go
1
star
27

asdb-api

This is a port of the antiSMASH DB backend into Rust.
Rust
1
star
28

contorted

Automatically exported from code.google.com/p/contorted
C
1
star
29

match-ids

Match IDs (or more precisely locus_tags) between two GenBank files.
Python
1
star
30

spire

Search for Prokaryote Iron Response Elements
Python
1
star
31

genomedb-py

A tool to manage and use some metadata around NCBI GenBank genome files
Python
1
star
32

jsbio

A collection of JavaScript functions for biology applications.
JavaScript
1
star
33

wombatdb

Wombat Database Backend rewrite
Python
1
star
34

ipinfo

A small IP address echo server for use with a dynamic DNS change script.
Go
1
star
35

rna_extract

Extract tRNAs and rRNAs from sequences identified by NCBI GenBank ID
Python
1
star
36

statusbot

A command-line to twitter tool I use to let my servers tweet their status.
Python
1
star
37

swc-shell-novice

Python
1
star