John Lees (@johnlees)
github

johnlees

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  • Stars
    star
    117
  • Global Rank 185,430 (Top 7 %)
  • Followers 146
  • Following 10
  • Registered almost 11 years ago
  • Most used languages
    R
         25.0 %
    C++
         18.8 %
    Perl
         18.8 %
    Python
         18.8 %
    JavaScript
         6.3 %
    Shell
         6.3 %
    Cuda     6.3 %
  • Location πŸ‡¬πŸ‡§ United Kingdom
  • Country Total Rank 8,576
  • Country Ranking
    Cuda     60
    Perl
         82
    R
         422
    C++
         814
    Shell
         5,035
    Python
         8,479

Top repositories

1

seer

sequence element (kmer) enrichment analysis
C++
42
star
2

23andme-impute

Scripts and advice to run IMPUTE2 on 23 and me raw data
Perl
21
star
3

bioinformatics

Utilities written for bioinformatics
Perl
19
star
4

which_tree

Testing of phylogenetic inference methods
R
10
star
5

efficient-bge

scripts and methods for fast bacterial genomic epidemiology
Python
4
star
6

tajima-D

calculates tajima's D from bcftools query input
C++
4
star
7

R_plots

Some scripts to create plots in R
R
2
star
8

PopPUNK-web

Web version of PopPUNK
JavaScript
2
star
9

config

Config files stored in ~
Shell
1
star
10

genometrackr_access

Downloading data from NCBI Genometrackr
Python
1
star
11

cuda_rng_benchmarking

Benchmarking the RNG in dust against curand
Cuda
1
star
12

pyseer

SEER, reimplemented in python
Python
1
star
13

meningene

Programs and scripts used for analysis of the meningene cohort
R
1
star
14

rapidnj

Code for rapidNJ by Martin Simonsen, Thomas Mailund and Christian N. S. Pedersen.
C++
1
star
15

paired-samples

Scripts and plots used for 'Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis'
Perl
1
star
16

PopPUNK-scripts

Scripts used to help produce extra analysis for the PopPUNK manuscript
R
1
star