Discover @johanzi Open Source projects

Johan Zicola (@johanzi)

johanzi

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Registered about 7 years ago
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Location 🇩🇪 Germany
Country Total Rank 17,555
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gwas_gemma

Perform GWAS with gemma in a simple pipeline

fastq_generator

A suite of tools to generate random or mapped fastq files

RNA-seq_pipeline

Pipeline for RNA-seq analysis

phylogenetic_shadowing

Pipeline to perform phylogenetic shadowing based on VISTA tools.

Rich Text Format

ncbi_tutorial

How to use the NCBI ressources from the command line and not be lost in the NCBI huge documentation

scripts_Zicola_2019

Extended scripts and data from Zicola et al 2019

make_pseudogenome

Generate pseudogenomes in fasta format for Arabidopsis accessions based on a VCF file.

crispr_cas9_arabidopsis

Step by step to generate CRISPR-Cas9 transgenic lines in Arabidopsis thaliana with useful scripts to facilitate primer design