Jody Phelan (@jodyphelan)
github

jodyphelan

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Top repositories

1

TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Python
89
star
2

tbdb

Standard database for the TBProfiler tool
Python
26
star
3

pathogen-profiler

This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data
Python
10
star
4

genomics_course

JavaScript
10
star
5

NTM-Profiler

Profiling NTM WGS data
Python
8
star
6

tb-profiler-webserver

HTML
4
star
7

ntmdb

3
star
8

tbprofiler_scripts

Python
2
star
9

dengue-ngs

Python
2
star
10

tb-profiler-webdriver

Allows submitting of fastq files to a remote TB-Profiler server through a lightweight python API
Python
2
star
11

ena-download

Python
2
star
12

pathogen_multiomics_course

JavaScript
2
star
13

covid-profiler

HTML
2
star
14

tb-ml

A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis
Python
2
star
15

gwasPipeline

Python
1
star
16

host-pathogen

Python
1
star
17

pathogenseq

Python
1
star
18

ahpC

Python
1
star
19

pathogenseq-scripts

Perl
1
star
20

gwas

Perl
1
star
21

tb_gwas

Python
1
star