James Bonfield (@jkbonfield)
github

jkbonfield

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  • Stars
    star
    193
  • Global Rank 126,672 (Top 5 %)
  • Followers 104
  • Following 1
  • Registered about 12 years ago
  • Most used languages
    C
         83.3 %
    Perl
         8.3 %
    Shell
         8.3 %
  • Location 🇬🇧 United Kingdom
  • Country Total Rank 5,865
  • Country Ranking
    C
         260
    Perl
         511
    Shell
         3,357

Top repositories

1

rans_static

rANS coder (derived from https://github.com/rygorous/ryg_rans)
C
80
star
2

io_lib

Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.
C
36
star
3

crumble

Exploration of controlled loss of quality values for compressing CRAM files
C
34
star
4

fqzcomp

Fastq compression tool
C
14
star
5

fqzcomp5

C
5
star
6

htslib_benchmark

Benchmarking of htslib and other tools
Shell
3
star
7

qual_smooth

C
2
star
8

io_trace

Summarises strace output
Perl
2
star
9

qpg

Pangenome explorations
C
2
star
10

mpeg_misc

Miscellaneous scripts and code for working on the MPEG genome-compression AHG
C
1
star
11

gdcc

C
1
star
12

sam_realigner

Realigns SAM/BAM/CRAM files to fix pairwise vs multiple alignment issues.
C
1
star