John Blischak (@jdblischak)
github

jdblischak

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  • Stars
    star
    390
  • Global Rank 71,771 (Top 3 %)
  • Followers 321
  • Following 492
  • Registered over 12 years ago
  • Most used languages
    R
         46.4 %
    HTML
         21.4 %
    Shell
         7.1 %
    TeX
         7.1 %
    Python
         7.1 %
    Jupyter Notebook
         7.1 %
    CSS
         3.6 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 17,771
  • Country Ranking
    R
         344
    TeX
         456
    Shell
         1,933
    HTML
         5,949

Top repositories

1

singleCellSeq

Batch effects and the effective design of single-cell gene expression studies
R
97
star
2

smk-simple-slurm

A simple Snakemake profile for Slurm without --cluster-config
Shell
84
star
3

r-project-workflows

List of workflow tools for R projects
81
star
4

git-for-science

A quick introduction to version control with Git and GitHub
TeX
31
star
5

reproducible-research-ctv

**Archived** CRAN Task View: Reproducible Research
R
14
star
6

singlecell-qtl

Discovery and characterization of variance QTLs in human induced pluripotent stem cells
Python
9
star
7

tbd

To be determined... -> TB Dissertation
TeX
8
star
8

fucci-seq

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
R
7
star
9

ctv-project-workflows

R Task View: Project Workflows
HTML
7
star
10

cardioqtl

R
6
star
11

faviconPlease

Find URL for a website's favicon
R
6
star
12

workflowrBeta

The beta release of workflowr
R
5
star
13

giladlab-midway-guide

Guide to using RCC Midway
5
star
14

repdoc

Package for testing workflowr features
HTML
3
star
15

filter_probes

Filter Illumina HT-12 v4 probes for presence of HapMap CEU SNPs
Python
3
star
16

tb-suscept

Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells
R
3
star
17

jdb-conda

Scripts, recipes, and docs for maintaining Conda packages
Jupyter Notebook
2
star
18

2016-09-15-chicago

Website for 2016 Software Carpentry workshop for UChicago BSD
HTML
2
star
19

r-intermediate-altmetrics

A 2-day workshop on intermediate-level programming with R
HTML
2
star
20

ci4r

Demonstrate CI testing for an R package
R
2
star
21

midway-subread-pipeline

Process RNA-seq data with Subread on RCC Midway
R
2
star
22

2016-09-14-introR

Website for 2016 UChicago BSD Introduction to R Workshop
HTML
2
star
23

blog.jdblischak.com

My blog
HTML
2
star
24

whereami

Visualize your current working directory
R
1
star
25

computing-tips

Computing tips for scientists
Shell
1
star
26

dsc-mouthwash

Dynamic Statistical Comparisons for MOUTHWASH simulations
R
1
star
27

test-issue-templates

Temporary repo to test GitHub Issue Templates
1
star
28

open-sci-template

Template for creating project website. Facilitates open science. Powered by R, knitr, and pandoc.
CSS
1
star
29

swc-novice-r

Data files for teaching Software Carpentry novice R lessons
1
star
30

dc-bioc-limma

DataCamp: Differential expression analysis in R with limma
R
1
star
31

workflowr-demo01

An example site created with workflowr
R
1
star
32

r-reproducibility-challenge

Exercise on reproducible research with R
1
star
33

2014-09-18-chicago

Software Carpentry bootcamp at University of Chicago
Jupyter Notebook
1
star