Jacob Reinhold (@jcreinhold)
github

jcreinhold

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Top repositories

1

intensity-normalization

normalize the intensities of various MR image modalities
Python
299
star
2

niftidataset

pytorch dataset class for reading and transforming NIfTI files
Jupyter Notebook
62
star
3

synthtorch

deep neural network-based image translation/synthesis
Python
27
star
4

counterfactualms

counterfactuals for magnetic resonance images of multiple sclerosis
Python
24
star
5

selfsupervised3d

methods to support self-supervised learning with 3D images
Jupyter Notebook
10
star
6

pymedio

read arbitrary medical image formats with python
Python
7
star
7

tiramisu-brulee

A 2D and 3D PyTorch implementation of the Tiramisu CNN
Python
5
star
8

pyrobex

python bindings for ROBEX brain extraction
Python
4
star
9

uncertaintorch

uncertainty-based synthesis and segmentation in pytorch
Python
3
star
10

lesion-metrics

metrics for evaluating lesion segmentations
Python
2
star
11

lesionqc

calculate quality metrics for lesion segmentation results
Python
1
star
12

msseg

Multiple sclerosis T2 lesion segmentation
Python
1
star
13

replica

synthesize MR brain images via a random forest
MATLAB
1
star
14

annom

anomaly detection support for synthesis in pytorch
Python
1
star
15

synthit

an amalgam of (non-DNN-based) MR brain synthesis routines
Python
1
star