Discover @jakobnissen Open Source projects

Jakob Nybo Nissen (@jakobnissen)

jakobnissen

Stars
677
Global Rank 42,666 (Top 2 %)
Followers 192
Following 4
Registered over 7 years ago
Most used languages

Julia
78.4 %

Rust
16.2 %

HTML
2.7 %

Jupyter Notebook
2.7 %
Location 🇩🇰 Denmark
Country Total Rank 236
Country Ranking

Julia
1

Rust
30

Jupyter Notebook
139

HTML
995

hardware_introduction

What scientific programmers must know about CPUs and RAM to write fast code.

alen

Simple terminal alignment viewer

ErrorTypes.jl

Rust-like error types in Julia

ScanByte.jl

Find your bytes. Fast.

Probably.jl

Probabilistic data structures in Julia

MinHash.jl

Fast and generic implementation of the minhash algorithm

StackCollections.jl

Fixed-bit collections in Julia

automa_tutorial

Tutorial for Automa.jl - a Julia parser generator

Jupyter Notebook

MojoFQBenchmark

Source code for Mojo FASTQ benchmark

julia_bio_phdcourse

Introduction to BioJulia for students studying Julia

LibDeflate.jl

Julia bindings for libdeflate

AoC2021

Advent of Code 2021 in Julia

advent2020

Advent of code 2020

ASCIIStrings.jl

Julia strings guaranteed to be ASCII

StringNewTypes.jl

A macro for the newtype pattern for strings

FluPhylogeny

Influenza phylogenetic pipeline

CodecBGZF.jl

BGZF codecs for TranscodingStreams.jl

Influenza.jl

Common types and functionality for influenza analysis

BadBio

Convenience code for bioinformatics, written badly in Julia

GenBankFeatureTables.jl

Parser for GenBank Feature Tables

BioNumerics.jl

Various tools for interfacing with BioNumerics

NCBIInfluenzaData.jl

Package for parsing NCBI influenza data

2021_h3n2

2021 H3N2 project

advent2021

Advent of Code 2021

KmerMinhash.jl

K-mer minhashing in Julia

BinBencherBackend.jl

Library for BinBencher - metagenomic binning benchmarking tool

jakobnissen.github.io

fastqfilt

Filter fastq files

AoC2022

AoC2022 in Julia

KMATools.jl

Tools for parsing KMA output

advent2018

palma2022_julia

Julia introduction for Pythonistas

2020hpai

Code for 2020 HPAI Denmark paper

BlastParse.jl

Simple function to parse BLAST tabular output

latency-history

Script for data in https://viralinstruction.com/posts/latency/

VetLIMS.jl

Package to interface with VetLIMS

binarytrees

Binary trees benchmark in Rust and Julia

investigate

Create templates for scientific projects