Henk den Bakker (@hcdenbakker)
github

hcdenbakker

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  • Stars
    star
    104
  • Global Rank 198,425 (Top 7 %)
  • Followers 37
  • Following 63
  • Registered almost 9 years ago
  • Most used languages
    Python
         50.0 %
    Rust
         30.0 %
    Shell
         10.0 %
    Perl
         10.0 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 43,573
  • Country Ranking
    Perl
         635
    Rust
         1,456

Top repositories

1

sepia

taxonomic classifier based on the kraken2 algorithms and more
Rust
41
star
2

GTDB_Kraken

Kraken(2) database based on the GTDB project
Perl
21
star
3

colorid

Experiments with using BIGSI data structure for metagenomic and QC applications
Rust
16
star
4

SalmID

Rapid confirmation of Salmonella spp. and subspp. from sequence data
Python
7
star
5

phylo_misbehave

Python
5
star
6

bigsi_rs

Rust in-memory implementation of a BIGSI-like data structure
Rust
5
star
7

N50.sh

bash script to quickly produce some assembly stats
Shell
5
star
8

mcOutbryk

SNP calling pipeline using mccortex
Python
2
star
9

SeqSeroK

A k-mer based implementation of SeqSero
Python
1
star
10

SRA_SeqSeroandIsPCR

pipeline for download, assembly and in silico PCR for primer testing in python
Python
1
star