Discover @habi Open Source projects

David Haberthür (@habi)

habi

Stars
300
Global Rank 89,066 (Top 4 %)
Followers 80
Following 35
Registered over 12 years ago
Most used languages

TeX
46.9 %

Jupyter Notebook
31.3 %

HTML
12.5 %

Python
3.1 %

OpenSCAD 3.1 %

R
3.1 %
Location 🇨🇭 Switzerland
Country Total Rank 1,012
Country Ranking

TeX
9

OpenSCAD 13

Jupyter Notebook
374

R
398

HTML
461

Python
1,258

latex

Some LaTeX code snippets I've hacked together over the years.

PhD-Thesis

My PhD-Thesis, copied from the virtual SVN-server I installed at the Institute of Anatomy of the University of Bern in Switzerland and migrated to git.

GlobalDiagnostiX

Code and stuff written for my work on http://globaldiagnostix.org/

latex-test

Results (automatically) in http://habi.github.io/latex-test/main.pdf

OpenSCAD

A collection of OpenSCAD models; stuff to fix private 'issues' and gifts

zmk-tooth-cohort

Scanning +100 teeth with our sample changer

Jupyter Notebook

Lecture.Microtomography

A lecture on (micro)tomography

Zebra-Fish-Gills

Analysis for https://doi.org/10.1371/journal.pone.0228333

Jupyter Notebook

acinar-analysis-manuscript

Talk.2022.MICResearchDay

My presentation for the https://www.mic.unibe.ch/events/past_mic_events/mic_research_day_2022/

EAWAG-manuscript

A small manuscript on the preparation and tomographic scanning of a corpus of cichlids from the EAWAG. And a bit on the treatment of the data.

ABED00RICK

Config files for my GitHub profile.

ResearchStorage

Consistency check of 80 TB of data...

Jupyter Notebook

heart-neoangiogenesis

Analyzing tomographic scans of rat hearts

Jupyter Notebook

Talk.2021.Micro-CTUsersMeeting

Talk.2019.MicroCTWorkshop

My slides for the 'get to know' session of https://ilias.unibe.ch/goto_ilias3_unibe_crs_1589464.html

Talk.2017.AnatomyInternalSeminar

Talk.2021.ToScA

rabbitjaws

Several scans of several rabbit jaws, done a while ago by someone else, digged from the archive for a collaborative project.

Jupyter Notebook

habi

As per https://blog.frankel.ch/customizing-github-profile/1/

Talk.2020.AnatomyInternalSeminar

My talk for the internal seminar at the Institute of Anatomy

mtf

How to calculate edge function and the modulation transfer function. Or at leas how *I* calculate it.

Jupyter Notebook

kartendruck

Mouselegs.Tuebingen

Analysing scans of instilled mouse legs

Jupyter Notebook

MATLAB

MATLAB code written during my PhD

R

Some R scripts I hacked together

wilkerstrasse.ch

Website für die Wilkerstrasse

Talk.2022.TeachingInHigherEducation

A short concept explanation for https://ilias.unibe.ch/goto_ilias3_unibe_crs_2386876.html

TodesfaelleSchweiz

Plot der Todesfälle in der Schweiz mit den Daten des Bundesamts für Statistik

Jupyter Notebook

MyUnibeTalk

Template for a (LaTex) talk with the Unibe template

liver-nchp

Small notebook to explain our work for the manuscript on non-cirrhotic portal hypertension hepatic vascular remodeling in the liver

Jupyter Notebook

WideFieldScanPaper

http://doi.org/amg

latex-test-1

zmk-tooth-cohort-method-manuscript

Manubot repository for Tooth-Cohort analysis method. The 'original' version was written with manuscripts.io

EAWAG

Preparing the scans of several fishes for display

Jupyter Notebook