Gabriele Girelli (@ggirelli)
github

ggirelli

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  • Stars
    star
    71
  • Global Rank 266,236 (Top 10 %)
  • Followers 41
  • Following 82
  • Registered over 12 years ago
  • Most used languages
    Python
         50.0 %
    R
         22.7 %
    JavaScript
         9.1 %
    PHP
         4.5 %
    HCL     4.5 %
    C
         4.5 %
    Smarty     4.5 %
  • Location πŸ‡ΈπŸ‡ͺ Sweden
  • Country Total Rank 2,573
  • Country Ranking
    Smarty     13
    HCL     15
    R
         90
    Python
         484
    PHP
         1,334
    C
         1,530
    JavaScript
         2,040

Top repositories

1

oligo-melting

Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.
Python
11
star
2

GitHub-Actions-Planet-GitHubUniverse2021-NA

Welcome to GitHub Actions planet, which lives among the GitHub Universe and is a place with full of joys, knowledges, and activities
HCL
10
star
3

iFISH-probe-design

iFISH Probe Design: a Python3 package to build iFISH probes.
Python
9
star
4

python-click-autocomplete-example

Example on how to set up shell autocomplete for Python scripts.
Python
7
star
5

easy-webmention-js

A simple JavaScript library to serve Webmentions via Webmention.io
JavaScript
4
star
6

ood-fish

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)
R
4
star
7

fastx-barber

Python package to trim and extract flags from FASTA and FASTQ files.
Python
4
star
8

radiantkit

A Python3 Radial Image Analysis Toolkit
Python
3
star
9

pygpseq

Python3 package to analyse GPSeq images and manage TIFF files.
Python
2
star
10

ifpd2

ifpd2: a Python3.7+ package to build iFISH probes
Python
2
star
11

python-package-template

A Python3.8+ package template with workflows (linting and packaging), pre-commits, and issue templates.
Python
2
star
12

gpseqc

Nuclear centrality estimation from GPSeq experiment.
Python
2
star
13

iFISH4U

Custom routes, pages and files for iFISH4U website.
Smarty
2
star
14

bioTrackBinner

Binning biological data tracks and producing RDS containing data.tables
R
1
star
15

GPSeq-RadiCal

R script for fast and streamlined Radiality Calculation from GPSeq data.
R
1
star
16

ggkaryo2

ggplot2-based karyotype plotting R package
R
1
star
17

gpseqc-snakemake

Snakemake workflow to run GPSeqC pipeline.
Python
1
star
18

tepp

Tumor Evolution Paths Project
R
1
star
19

tema

TEMA (Tumor Evolution Manager and Analyzer)
PHP
1
star
20

SpectraScope

Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.
JavaScript
1
star
21

fish-probe-design

Suit to select set of oligomers as FISH probes from databases of locus-specific hybridizing oligomers.
Python
1
star
22

GPSeq-source-data

Source data for GPSeq manuscript.
C
1
star