Genomics Division, ITER (@genomicsITER)
github

genomicsITER

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  • Stars
    star
    227
  • Global Rank 111,538 (Top 4 %)
  • Followers 63
  • Following 15
  • Registered about 8 years ago
  • Most used languages
    Nextflow     40.0 %
    Jupyter Notebook
         20.0 %
    Shell
         20.0 %
    R
         20.0 %
  • Location 🇪🇸 Spain
  • Country Total Rank 1,670
  • Country Ranking
    Nextflow     3
    Jupyter Notebook
         121
    R
         597
    Shell
         1,577

Top repositories

1

NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Nextflow
103
star
2

NanoDJ

NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly
Jupyter Notebook
49
star
3

one-liners

Frequently used commands in Bioinformatics
19
star
4

COVID-19

A public repository of scientific and media resources of SARS-CoV-2 related COVID-19
16
star
5

PFgenetics

Collaborative genetic studies of idiopathic pulmonary fibrosis
14
star
6

NanoRTax

Real-time analysis pipeline for nanopore 16S rRNA data
Nextflow
11
star
7

monkeypox

Monkeypox public repository
3
star
8

HADA

Hereditary Angioedema Database Annotation
2
star
9

influenza

2
star
10

RSV

2
star
11

prepABEL

BASH scripting to prepare ProbABEL (a software to do survival analysis with dosage data) input files, -Genomic Predictor, INFO, and MAP- from dosage and info VCF files from Michigan Imputation Server
Shell
2
star
12

benchmarking

Benchmarking of WGS and WES workflows from NGS reference data and reference samples sequenced at ITER
2
star
13

mutational-burden-and-ccRCC-mortality

Repository with the whole code of our pipeline used in the analysis of mortality in metastatic clear cell kidney cancer carcinoma
R
1
star