Fritz Sedlazeck (@fritzsedlazeck)
github

fritzsedlazeck

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  • Stars
    star
    1,087
  • Global Rank 28,225 (Top 1.0 %)
  • Followers 216
  • Following 3
  • Registered over 12 years ago
  • Most used languages
    C++
         33.3 %
    HTML
         22.2 %
    Python
         22.2 %
    Nim
         11.1 %
    Shell
         11.1 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 9,459
  • Country Ranking
    Nim
         81
    C++
         949
    Python
         2,286
    HTML
         5,959
    Shell
         7,628

Top repositories

1

Sniffles

Structural variation caller using third generation sequencing
Python
547
star
2

SURVIVOR

Toolset for SV simulation, comparison and filtering
C++
353
star
3

Spectre

Copy number caller for long read data including SNV utilization
Python
50
star
4

SVCollector

Method to optimally select samples for validation and resequencing
C++
26
star
5

nibSV

Kmer based genotyper for short reads.
Nim
23
star
6

SURVIVOR_ant

A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
HTML
13
star
7

sge_mummer

Scripts to split reference and run mummer in parallel on an SGE cluster
Shell
11
star
8

BioBricks

A simple framework to simulate parental and admixture offsprings. The framework allows for a benchmark to distinguish inheritance blocks on the offsprings.
C++
8
star
9

fritzsedlazeck.github.io

My lab github page
HTML
5
star
10

teaching_material

Collection of teaching instructions
2
star