Fritz Sedlazeck (@fritzsedlazeck)
github

fritzsedlazeck

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  • Stars
    star
    1,039
  • Global Rank 29,279 (Top 2 %)
  • Followers 207
  • Following 3
  • Registered about 12 years ago
  • Most used languages
    C++
         33.3 %
    HTML
         22.2 %
    Python
         22.2 %
    Shell
         11.1 %
    Nim
         11.1 %
  • Location 🇺🇸 United States
  • Country Total Rank 9,459
  • Country Ranking
    Nim
         81
    C++
         964
    Python
         2,295
    HTML
         6,004
    Shell
         7,918

Top repositories

1

Sniffles

Structural variation caller using third generation sequencing
Python
542
star
2

SURVIVOR

Toolset for SV simulation, comparison and filtering
C++
345
star
3

Spectre

Copy number caller for long read data including SNV utilization
Python
47
star
4

SVCollector

Method to optimally select samples for validation and resequencing
C++
26
star
5

nibSV

Kmer based genotyper for short reads.
Nim
23
star
6

SURVIVOR_ant

A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
HTML
12
star
7

sge_mummer

Scripts to split reference and run mummer in parallel on an SGE cluster
Shell
11
star
8

BioBricks

A simple framework to simulate parental and admixture offsprings. The framework allows for a benchmark to distinguish inheritance blocks on the offsprings.
C++
8
star
9

fritzsedlazeck.github.io

My lab github page
HTML
5
star
10

teaching_material

Collection of teaching instructions
2
star